| Enzyme | Oligo Sequence | Chain Length | % Cleavage |
| 2 hr | 20 hr |
| AccI | GGTCGACC CGGTCGACCG CCGGTCGACCGG | 8 10 12 | 0 0 0 | 0 0 0 |
| AflIII | CACATGTG CCACATGTGG CCCACATGTGGG | 8 10 12 | 0 >90 >90 | 0 >90 >90 |
| AscI | GGCGCGCC AGGCGCGCCT TTGGCGCGCCAA | 8 10 12 | >90 >90 >90 | >90 >90 >90 |
| AvaI | CCCCGGGG CCCCCGGGGG TCCCCCGGGGGA | 8 10 12 | 50 >90 >90 | >90 >90 >90 |
| BamHI | CGGATCCG CGGGATCCCG CGCGGATCCGCG | 8 10 12 | 10 >90 >90 | 25 >90 >90 |
| BglII | CAGATCTG GAAGATCTTC GGAAGATCTTCC | 8 10 12 | 0 75 25 | 0 >90 >90 |
| BssHII | GGCGCGCC AGGCGCGCCT TTGGCGCGCCAA | 8 10 12 | 0 0 50 | 0 0 >90 |
| BstEII | GGGT(A/T)ACCC | 9 | 0 | 10 |
| BstXI | AACTGCAGAACCAATGCATTGG AAAACTGCAGCCAATGCATTGGAA CTGCAGAACCAATGCATTGGATGCAT | 22 24 27 | 0 25 25 | 0 50 >90 |
| ClaI | CATCGATG GATCGATC CCATCGATGG CCCATCGATGGG | 8 8 10 12 | 0 0 >90 50 | 0 0 >90 50 |
| EcoRI | GGAATTCC CGGAATTCCG CCGGAATTCCGG | 8 10 12 | >90 >90 >90 | >90 >90 >90 |
| HaeIII | GGGGCCCC AGCGGCCGCT TTGCGGCCGCAA | 8 10 12 | >90 >90 >90 | >90 >90 >90 |
| HindIII | CAAGCTTG CCAAGCTTGG CCCAAGCTTGGG | 8 10 12 | 0 0 10 | 0 0 75 |
| KpnI | GGGTACCC GGGGTACCCC CGGGGTACCCCG | 8 10 12 | 0 >90 >90 | 0 >90 >90 |
| MluI | GACGCGTC CGACGCGTCG | 8 10 | 0 25 | 0 50 |
| NcoI | CCCATGGG CATGCCATGGCATG | 8 14 | 0 50 | 0 75 |
| NdeI | CCATATGG CCCATATGGG CGCCATATGGCG GGGTTTCATATGAAACCC GGAATTCCATATGGAATTCC GGGAATTCCATATGGAATTCCC | 8 10 12 18 20 22 | 0 0 0 0 75 75 | 0 0 0 0 >90 >90 |
| NheI | GGCTAGCC CGGCTAGCCG CTAGCTAGCTAG | 8 10 12 | 0 10 10 | 0 25 50 |
| NotI | TTGCGGCCGCAA ATTTGCGGCCGCTTTA AAATATGCGGCCGCTATAAA ATAAGAATGCGGCCGCTAAACTAT AAGGAAAAAAGCGGCCGCAAAAGGAAAA | 12 16 20 24 28 | 0 10 10 25 25 | 0 10 10 90 >90 |
| NsiI | TGCATGCATGCA CCAATGCATTGGTTCTGCAGTT | 12 22 | 10 >90 | >90 >90 |
| PacI | TTAATTAA GTTAATTAAC CCTTAATTAAGG | 8 10 12 | 0 0 0 | 0 25 >90 |
| PmeI | GTTTAAAC GGTTTAAACC GGGTTTAAACCC AGCTTTGTTTAAACGGCGCGCCGG | 8 10 12 24 | 0 0 0 75 | 0 25 50 >90 |
| PstI | GCTGCAGC TGCACTGCAGTGCA AACTGCAGAACCAATGCATTGG AAAACTGCAGCCAATGCATTGGAA CTGCAGAACCAATGCATTGGATGCAT | 8 14 22 24 26 | 0 10 >90 >90 0 | 0 10 >90 >90 0 |
| PvuI | CCGATCGG ATCGATCGAT TCGCGATCGCGA | 8 10 12 | 0 10 0 | 0 25 10 |
| SacI | CGAGCTCG | 8 | 10 | 10 |
| SacII | GCCGCGGC TCCCCGCGGGGA | 8 12 | 0 50 | 0 >90 |
| SalI | GTCGACGTCAAAAGGCCATAGCGGCCGC GCGTCGACGTCTTGGCCATAGCGGCCGCGG ACGCGTCGACGTCGGCCATAGCGGCCGCGGAA | 28 30 32 | 0 10 10 | 0 50 75 |
| ScaI | GAGTACTC AAAAGTACTTTT | 8 12 | 10 75 | 25 75 |
| SmaI | CCCGGG CCCCGGGG CCCCCGGGGG TCCCCCGGGGGA | 6 8 10 12 | 0 0 10 >90 | 10 10 50 >90 |
| SpeI | GACTAGTC GGACTAGTCC CGGACTAGTCCG CTAGACTAGTCTAG | 8 10 12 14 | 10 10 0 0 | >90 >90 50 50 |
| SphI | GGCATGCC CATGCATGCATG ACATGCATGCATGT | 8 12 14 | 0 0 10 | 0 25 50 |
| StuI | AAGGCCTT GAAGGCCTTC AAAAGGCCTTTT | 8 10 12 | >90 >90 >90 | >90 >90 >90 |
| XbaI | CTCTAGAG GCTCTAGAGC TGCTCTAGAGCA CTAGTCTAGACTAG | 8 10 12 14 | 0 >90 75 75 | 0 >90 >90 >90 |
| XhoI | CCTCGAGG CCCTCGAGGG CCGCTCGAGCGG | 8 10 12 | 0 10 10 | 0 25 75 |
| XmaI | CCCCGGGG CCCCCGGGGG CCCCCCGGGGGG TCCCCCCGGGGGGA | 8 10 12 14 | 0 25 50 >90 | 0 75 >90 >90 |
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